Coverart for item
The Resource Arabidopsis protocols, edited by Jose J. Sanchez-Serrano, Julio Salinas

Arabidopsis protocols, edited by Jose J. Sanchez-Serrano, Julio Salinas

Label
Arabidopsis protocols
Title
Arabidopsis protocols
Statement of responsibility
edited by Jose J. Sanchez-Serrano, Julio Salinas
Contributor
Copyright holder
Editor
Subject
Genre
Language
eng
Summary
Arabidopsis Protocols, Third Edition compiles some of the most recent methodologies developed to exploit the Arabidopsis genome. These methodologies cover from the guided access to public resources, to genetic, cell biology, biochemical and physiological techniques, including both those that are widely used as well as those novel techniques likely to open up new avenues of knowledge in the future. In addition, considering the recent unparalleled progress of the "omics" tools in Arabidopsis, leading experts have contributed sections on genome, transcriptome, proteome, metabolome and other whole-system approaches. Arabidopsis thaliana is acknowledged as the most important plant model system by the scientific community and Arabidopsis research has fundamentally influenced our understanding of the basic biology and ecology of plants. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls.Authoritative and easily accessible, Arabidopsis Protocols, Third Edition seeks to serve both experienced researchers and beginners with its detailed methodologies on this burgeoning scientific field
Member of
Cataloging source
YDXCP
Illustrations
illustrations
Index
index present
LC call number
QK495.C9
LC item number
A735 2014
Literary form
non fiction
Nature of contents
bibliography
http://library.link/vocab/relatedWorkOrContributorName
  • Sánchez-Serrano, Jose J.
  • Salinas, Julio
  • Springer Science+Business Media
Series statement
  • Methods in molecular biology,
  • Springer protocols,
Series volume
1062
http://library.link/vocab/subjectName
  • Arabidopsis
  • Arabidopsis
  • Arabidopsis thaliana
  • Arabidopsis
  • Arabidopsis
  • Plant Preparations
  • Plant Structures
  • Arabidopsis thaliana
Label
Arabidopsis protocols, edited by Jose J. Sanchez-Serrano, Julio Salinas
Instantiates
Publication
Copyright
Bibliography note
Includes bibliographical references and index
Carrier category
volume
Carrier category code
  • nc
Carrier MARC source
rdacarrier.
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent.
Contents
1. Handling Arabidopsis plants: growth, preservation of seeds, transformation and genetic crosses / Luz Rivero, Randy Scholl, Nicholas Holomuzki, Deborah Crist, Erich Grotewold, and Jelena Brkljacic --2. Using Arabidopsis related model species (ARMS): growth, genetic transformation and comparative gnomics / Giorgia Batelli, Dong-Ha Oh, Matilde Paino D'Urzo, Francesco Orsini, Maheshi Dassanayake, Jian-Kang Zhu, Hans J. Bohnert, Ray A. Bressan and Albino Maggio -- 3. Growing Arabidopsis in vitro: cell suspensions, in vitro culture, and regeneration / Bronwyn J. Barkla, Rosario Vera-Estrella, and Omar Pantoja -- 4. Arabidopsis database and stock resources / Donghui Li, Kate Dreher, Emma Knee, Jelena Brkljacic, Erich Grotewold, Tanya Z. Berardini, Philippe Lamesch, Margarita Garcia-Hernandez, Leonore Reiser and Eva Huala -- 5. Bioinformatic tools in Arabidopsis research / Miguel de Lucas, Nicholas J. Provart, and Siobhan Brady -- 6. Exploiting natural variation in Arabidopsis / Johanna A. Molenaar and Joost J. B. Keurentjes -- 7. Grafting in Arabidopsis / Katherine Bainbridge, Tom Bennett, Peter Crisp, Ottoline Leyser, and Colin Turnbull -- 8. Agrobacterium tumefaciens mediated transient transformation of Arabidopsis thaliana leaves / Silvina Mangano, Cintia Daniela Gonzalez, and Silvana Petruccelli -- 9. iTilling: personalized mutation screening / Susan M. Bush and Patrick J. Krysan --10. Tailor Made Mutations in Arabidopsis Using Zinc-Finger Nucleases / Yiping Qi, Colby G. Starker, Feng Zhang, Nicholas J. Baltes, and Daniel F. Voytas -- 11. The Use of Artificial Micro RNA Technology to Control Gene Expression in Arabidopsis thaliana / Andrew L. Eamens, Marcus McHale, and Peter M. Waterhouse -- 12. Generation and Identification of Arabidopsis EMS Mutants / Li-Jia Qu and Gengi Qin --13. Generation and Identification of Arabidopsis T-DNA Insertion Mutants / Li-Jia Qu and Gengi Qin --14. Identification of EMS-induced Causal Mutations in Arabidopsis thaliana by Next-Generation Sequencing /Naoyuki Uchida, Tomoaki Sakamoto, Masao Tasaka, and Tetsuya Kurata -- 15. Arabidopsis Transformation with Large Bacterial Artificial Chromosomes /Jose M. Alonso and Anna N. Stepanova --16. Global DNA Methylation Analysis Using Methyl-Sensitive Amplification Polymorphism (MSAP) / Mahmoud W. Yaish, Mingsheng Peng, and Steven J. Rothstein --17. Next Generation Mapping of Genetic Mutations Using Bulk Population Sequencing / Ryan S. Austin, Steven P. Chatfield, Darrell Desveaux, and David S. Guttman --18. Chemical Fingerprinting of Arabidopsis Using Fourier-transform Infrared (FT-IR) Spectroscopic Approaches /András Gorzsás and Björn Sundberg -- 19. A Pipeline for 15N Metabolic Labeling and Phosphoproteome Analysis in Arabidopsis thaliana / Benjamin B. Minkoff, Heather L. Burch, and Michael R. Sussman -- 20. Gene Expression Profiling Using DNA Microarrays / Kyonoshin Maruyama, Kazuko Yamaguchi-Shinozaki, and Kazuo Shinozaki -- 21. Forward Chemical Genetic Screening /Hyunmo Choi, Jun-Young Kim, Young Tae Chang, and Hong Gil Nam -- 22. Highly-Reproducible ChIP-On-Chip Analysis to Identify Genome-Wide Protein Binding and Chromatin Status in Arabidopsis thaliana / Jong-Myong Kim, Taiko Kim To, Maho Tanaka, Takaho A. Endo, Akihiro Matsui, Junko Ishida, Fiona C. Robertson, Tetsuro Toyoda, and Motoaki Seki -- 23. Fluorescence Microscopy / Sebastien Peter, Klaus Harter, and Frank Schleifenbaum -- 24. Immunocytochemical Fluorescent In Situ Visualization of Proteins in Arabidopsis / Yohann Boutté and Markus Grebe --25. High Pressure Freezing and Freeze Substitution of Arabidopsis For Electron Microscopy / Jotham R. Austin, II. -- 26. Applications of Fluorescent Marker Proteins in Plant Cell Biology / Michael R. Blatt and Christopher Grefen -- 27. Flow Cytometry and Sorting in Arabidopsis / David W. Galbraith -- 28. Live Imaging of Arabidopsis Development / Daniel von Wangenheim, Gabor Daum, Jan U. Lohmann , Ernst K. Stelzer, and Alexis Maizel -- 29. Arabidopsis Organelle Isolation and Characterisation / Nicolas L. Taylor, Elke Ströher, and A. Harvey Millar -- 30. Analysis of Subcellular Metabolite Distributions within Arabidopsis thaliana Leaf Tissue: A Primer for Subcellular Metabolomics / Stephan Krueger, Dirk Steinhauser, Jan Lisec, and Patrick Giavalisco -- 31. Hormone Profiling --Gaetan Glauser, Armelle Vallat, and Dirk Balmer -- 32. Purification of Protein Complexes and Characterization of Protein-Protein Interactions / Kirby N. Swatek, Chris B. Lee, and Jay J. Thelen -- 33. Protein Fragment Bimolecular Fluorescence Complementation Analysis for the In vivo Study of Protein-Protein Interactions and Cellular Protein Complex Localizations / Rainer Waadt, Kathrin Schlückling, Julian I. Schroeder, and Jörg Kudla -- 34. The Split Ubiquitin System for the Analysis of Three-Component Interactions Christopher Grefen -- 35. RNA-Binding Protein Immunoprecipitation from Whole Cell Extracts / Tino Köster and Dorothee Staiger -- 36. High Throughput Analysis of Protein-DNA Binding Affinity / José M. Franco-Zorrilla and Roberto Solano
Control code
843078176
Dimensions
26 cm
Edition
Third edition.
Extent
xvi, 726 pages
Isbn
9781627035798
Isbn Type
(cloth : acid-free paper)
Lccn
2013948230
Media category
unmediated
Media MARC source
rdamedia.
Media type code
  • n
Other physical details
illustrations (some color)
System control number
(OCoLC)843078176
Label
Arabidopsis protocols, edited by Jose J. Sanchez-Serrano, Julio Salinas
Publication
Copyright
Bibliography note
Includes bibliographical references and index
Carrier category
volume
Carrier category code
  • nc
Carrier MARC source
rdacarrier.
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent.
Contents
1. Handling Arabidopsis plants: growth, preservation of seeds, transformation and genetic crosses / Luz Rivero, Randy Scholl, Nicholas Holomuzki, Deborah Crist, Erich Grotewold, and Jelena Brkljacic --2. Using Arabidopsis related model species (ARMS): growth, genetic transformation and comparative gnomics / Giorgia Batelli, Dong-Ha Oh, Matilde Paino D'Urzo, Francesco Orsini, Maheshi Dassanayake, Jian-Kang Zhu, Hans J. Bohnert, Ray A. Bressan and Albino Maggio -- 3. Growing Arabidopsis in vitro: cell suspensions, in vitro culture, and regeneration / Bronwyn J. Barkla, Rosario Vera-Estrella, and Omar Pantoja -- 4. Arabidopsis database and stock resources / Donghui Li, Kate Dreher, Emma Knee, Jelena Brkljacic, Erich Grotewold, Tanya Z. Berardini, Philippe Lamesch, Margarita Garcia-Hernandez, Leonore Reiser and Eva Huala -- 5. Bioinformatic tools in Arabidopsis research / Miguel de Lucas, Nicholas J. Provart, and Siobhan Brady -- 6. Exploiting natural variation in Arabidopsis / Johanna A. Molenaar and Joost J. B. Keurentjes -- 7. Grafting in Arabidopsis / Katherine Bainbridge, Tom Bennett, Peter Crisp, Ottoline Leyser, and Colin Turnbull -- 8. Agrobacterium tumefaciens mediated transient transformation of Arabidopsis thaliana leaves / Silvina Mangano, Cintia Daniela Gonzalez, and Silvana Petruccelli -- 9. iTilling: personalized mutation screening / Susan M. Bush and Patrick J. Krysan --10. Tailor Made Mutations in Arabidopsis Using Zinc-Finger Nucleases / Yiping Qi, Colby G. Starker, Feng Zhang, Nicholas J. Baltes, and Daniel F. Voytas -- 11. The Use of Artificial Micro RNA Technology to Control Gene Expression in Arabidopsis thaliana / Andrew L. Eamens, Marcus McHale, and Peter M. Waterhouse -- 12. Generation and Identification of Arabidopsis EMS Mutants / Li-Jia Qu and Gengi Qin --13. Generation and Identification of Arabidopsis T-DNA Insertion Mutants / Li-Jia Qu and Gengi Qin --14. Identification of EMS-induced Causal Mutations in Arabidopsis thaliana by Next-Generation Sequencing /Naoyuki Uchida, Tomoaki Sakamoto, Masao Tasaka, and Tetsuya Kurata -- 15. Arabidopsis Transformation with Large Bacterial Artificial Chromosomes /Jose M. Alonso and Anna N. Stepanova --16. Global DNA Methylation Analysis Using Methyl-Sensitive Amplification Polymorphism (MSAP) / Mahmoud W. Yaish, Mingsheng Peng, and Steven J. Rothstein --17. Next Generation Mapping of Genetic Mutations Using Bulk Population Sequencing / Ryan S. Austin, Steven P. Chatfield, Darrell Desveaux, and David S. Guttman --18. Chemical Fingerprinting of Arabidopsis Using Fourier-transform Infrared (FT-IR) Spectroscopic Approaches /András Gorzsás and Björn Sundberg -- 19. A Pipeline for 15N Metabolic Labeling and Phosphoproteome Analysis in Arabidopsis thaliana / Benjamin B. Minkoff, Heather L. Burch, and Michael R. Sussman -- 20. Gene Expression Profiling Using DNA Microarrays / Kyonoshin Maruyama, Kazuko Yamaguchi-Shinozaki, and Kazuo Shinozaki -- 21. Forward Chemical Genetic Screening /Hyunmo Choi, Jun-Young Kim, Young Tae Chang, and Hong Gil Nam -- 22. Highly-Reproducible ChIP-On-Chip Analysis to Identify Genome-Wide Protein Binding and Chromatin Status in Arabidopsis thaliana / Jong-Myong Kim, Taiko Kim To, Maho Tanaka, Takaho A. Endo, Akihiro Matsui, Junko Ishida, Fiona C. Robertson, Tetsuro Toyoda, and Motoaki Seki -- 23. Fluorescence Microscopy / Sebastien Peter, Klaus Harter, and Frank Schleifenbaum -- 24. Immunocytochemical Fluorescent In Situ Visualization of Proteins in Arabidopsis / Yohann Boutté and Markus Grebe --25. High Pressure Freezing and Freeze Substitution of Arabidopsis For Electron Microscopy / Jotham R. Austin, II. -- 26. Applications of Fluorescent Marker Proteins in Plant Cell Biology / Michael R. Blatt and Christopher Grefen -- 27. Flow Cytometry and Sorting in Arabidopsis / David W. Galbraith -- 28. Live Imaging of Arabidopsis Development / Daniel von Wangenheim, Gabor Daum, Jan U. Lohmann , Ernst K. Stelzer, and Alexis Maizel -- 29. Arabidopsis Organelle Isolation and Characterisation / Nicolas L. Taylor, Elke Ströher, and A. Harvey Millar -- 30. Analysis of Subcellular Metabolite Distributions within Arabidopsis thaliana Leaf Tissue: A Primer for Subcellular Metabolomics / Stephan Krueger, Dirk Steinhauser, Jan Lisec, and Patrick Giavalisco -- 31. Hormone Profiling --Gaetan Glauser, Armelle Vallat, and Dirk Balmer -- 32. Purification of Protein Complexes and Characterization of Protein-Protein Interactions / Kirby N. Swatek, Chris B. Lee, and Jay J. Thelen -- 33. Protein Fragment Bimolecular Fluorescence Complementation Analysis for the In vivo Study of Protein-Protein Interactions and Cellular Protein Complex Localizations / Rainer Waadt, Kathrin Schlückling, Julian I. Schroeder, and Jörg Kudla -- 34. The Split Ubiquitin System for the Analysis of Three-Component Interactions Christopher Grefen -- 35. RNA-Binding Protein Immunoprecipitation from Whole Cell Extracts / Tino Köster and Dorothee Staiger -- 36. High Throughput Analysis of Protein-DNA Binding Affinity / José M. Franco-Zorrilla and Roberto Solano
Control code
843078176
Dimensions
26 cm
Edition
Third edition.
Extent
xvi, 726 pages
Isbn
9781627035798
Isbn Type
(cloth : acid-free paper)
Lccn
2013948230
Media category
unmediated
Media MARC source
rdamedia.
Media type code
  • n
Other physical details
illustrations (some color)
System control number
(OCoLC)843078176

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