Coverart for item
The Resource Bacterial molecular networks : methods and protocols, edited by Jacques van Helden and Ariane Toussaint, Denis Thieffry, (electronic resource)

Bacterial molecular networks : methods and protocols, edited by Jacques van Helden and Ariane Toussaint, Denis Thieffry, (electronic resource)

Label
Bacterial molecular networks : methods and protocols
Title
Bacterial molecular networks
Title remainder
methods and protocols
Statement of responsibility
edited by Jacques van Helden and Ariane Toussaint, Denis Thieffry
Contributor
Subject
Genre
Language
eng
Member of
Cataloging source
BTCTA
LC call number
QH434
LC item number
.B336 2012
http://library.link/vocab/relatedWorkOrContributorName
  • Helden, Jacques van
  • Toussaint, Ariane
  • Thieffry, Denis
Series statement
  • Methods in molecular biology,
  • Springer protocols
Series volume
804
http://library.link/vocab/subjectName
  • Bacterial genetics
  • Gene regulatory networks
  • Cell interaction
  • Bacteria
  • Gene Regulatory Networks
  • Systems Biology
Label
Bacterial molecular networks : methods and protocols, edited by Jacques van Helden and Ariane Toussaint, Denis Thieffry, (electronic resource)
Instantiates
Publication
Bibliography note
Includes bibliographical references and index
Contents
Bacterial molecular networks : bridging the gap between functional genomics and dynamical modelling / Jacques van Helden, Ariane Toussaint, and Denis Thieffry -- Bacterial interactomes : from interactions to networks / Emmanuelle Bouveret and Christine Brun -- From bacterial to microbial ecosystems (metagenomics) / Shannon J. Williamson and Shibu Yooseph -- Prokaryote genome fluidity : toward a system approach of the mobilome / Ariane Toussaint and Mick Chandler -- Reticulate classification of mosaic microbial genomes using NeAT website / Gipsi Lima-Mendez -- From metabolic reactions to networks and pathways / Masanori Arita -- Predicting metabolic pathways by sub-network extraction / Karoline Faust and Jacques van Helden -- Directed module detection in a large-scale expression compendium / Qiang Fu ... [et al.] -- Using phylogenetic profiles to predict functional relationships / Matteo Pellegrini -- Extracting regulatory networks of Escherichia coli from RegulonDB / Heladia Salgado ... [et al.] -- Browsing metabolic and regulatory networks with BioCyc / Mario Latendresse, Suzanne Paley, and Peter D. Karp -- Algorithms for systematic identification of small subgraphs / Joseph Geraci, Geoffrey Liu, and Igor Jurisica -- The degree distribution of networks : statistical model selection / William P. Kelly, Piers J. Ingram, and Michael P.H. Stumpf -- MAVisto : a tool for biological network motif analysis / Henning Schwöbbermeyer and Röbbe Wünschiers -- Using MCL to extract clusters from networks / Stijn van Dongen and Cei Abreu-Goodger -- Protein complex prediction with RNSC / Andrew D. King, Nataša Pržulj, and Igor Jurisica -- Network analysis and protein function prediction with the PRODISTIN web site / Anaïs Baudot, Ouissem Souiai, and Christine Brun -- Using NeAT Toolbox to compare networks to networks, clusters to clusters, and network to clusters / Sylvain Brohée -- Analyzing biological data using R : methods for graphs and networks / Nolwenn Le Meur and Robert Gentleman -- Detecting structural invariants in biological reaction networks / Jörn Behre ... [et al.] -- Petri nets in Snoopy : a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks / Wolfgang Marwan, Christian Rohr, and Monika Heiner -- Genetic Network Analyzer : a tool for the qualitative modeling and simulation of bacterial regulatory networks / Grégory Batt ... [et al.] -- Logical modelling of gene regulatory networks with GINsim / Claudine Chaouiya, Aurélien Naldi, and Denis Thieffry -- Modelling the evolution of mutualistic symbioses / Maren L. Friesen and Emily I. Jones -- Modelling the onset of virulence in pthogenic bacteria / Wilfred D. Kepseu ... [et al.] -- Spatial and stochastic cellular modeling with the Smoldyn Simulator / Steven S. Andrews
Control code
OCM1bookssj0000609215
Dimensions
27 cm.
Dimensions
unknown
Extent
xi, 546 pages
Isbn
9781617793615
Isbn Type
(e-ISBN)
Lccn
2011938202
Other physical details
illustrations
Specific material designation
remote
System control number
(WaSeSS)ssj0000609215
Label
Bacterial molecular networks : methods and protocols, edited by Jacques van Helden and Ariane Toussaint, Denis Thieffry, (electronic resource)
Publication
Bibliography note
Includes bibliographical references and index
Contents
Bacterial molecular networks : bridging the gap between functional genomics and dynamical modelling / Jacques van Helden, Ariane Toussaint, and Denis Thieffry -- Bacterial interactomes : from interactions to networks / Emmanuelle Bouveret and Christine Brun -- From bacterial to microbial ecosystems (metagenomics) / Shannon J. Williamson and Shibu Yooseph -- Prokaryote genome fluidity : toward a system approach of the mobilome / Ariane Toussaint and Mick Chandler -- Reticulate classification of mosaic microbial genomes using NeAT website / Gipsi Lima-Mendez -- From metabolic reactions to networks and pathways / Masanori Arita -- Predicting metabolic pathways by sub-network extraction / Karoline Faust and Jacques van Helden -- Directed module detection in a large-scale expression compendium / Qiang Fu ... [et al.] -- Using phylogenetic profiles to predict functional relationships / Matteo Pellegrini -- Extracting regulatory networks of Escherichia coli from RegulonDB / Heladia Salgado ... [et al.] -- Browsing metabolic and regulatory networks with BioCyc / Mario Latendresse, Suzanne Paley, and Peter D. Karp -- Algorithms for systematic identification of small subgraphs / Joseph Geraci, Geoffrey Liu, and Igor Jurisica -- The degree distribution of networks : statistical model selection / William P. Kelly, Piers J. Ingram, and Michael P.H. Stumpf -- MAVisto : a tool for biological network motif analysis / Henning Schwöbbermeyer and Röbbe Wünschiers -- Using MCL to extract clusters from networks / Stijn van Dongen and Cei Abreu-Goodger -- Protein complex prediction with RNSC / Andrew D. King, Nataša Pržulj, and Igor Jurisica -- Network analysis and protein function prediction with the PRODISTIN web site / Anaïs Baudot, Ouissem Souiai, and Christine Brun -- Using NeAT Toolbox to compare networks to networks, clusters to clusters, and network to clusters / Sylvain Brohée -- Analyzing biological data using R : methods for graphs and networks / Nolwenn Le Meur and Robert Gentleman -- Detecting structural invariants in biological reaction networks / Jörn Behre ... [et al.] -- Petri nets in Snoopy : a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks / Wolfgang Marwan, Christian Rohr, and Monika Heiner -- Genetic Network Analyzer : a tool for the qualitative modeling and simulation of bacterial regulatory networks / Grégory Batt ... [et al.] -- Logical modelling of gene regulatory networks with GINsim / Claudine Chaouiya, Aurélien Naldi, and Denis Thieffry -- Modelling the evolution of mutualistic symbioses / Maren L. Friesen and Emily I. Jones -- Modelling the onset of virulence in pthogenic bacteria / Wilfred D. Kepseu ... [et al.] -- Spatial and stochastic cellular modeling with the Smoldyn Simulator / Steven S. Andrews
Control code
OCM1bookssj0000609215
Dimensions
27 cm.
Dimensions
unknown
Extent
xi, 546 pages
Isbn
9781617793615
Isbn Type
(e-ISBN)
Lccn
2011938202
Other physical details
illustrations
Specific material designation
remote
System control number
(WaSeSS)ssj0000609215

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