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The Resource Differential display methods and protocols, edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee

Differential display methods and protocols, edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee

Label
Differential display methods and protocols
Title
Differential display methods and protocols
Statement of responsibility
edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee
Contributor
Subject
Genre
Language
eng
Summary
Carrying on the high standards of the first edition of Differential Display Methods, Peng Liang et al. have based their second edition on a new mathematical model of differential display (DD) that takes advantage of automation, as well as digital data acquisition and analysis. These well-versed authors explain and highlight all the recent methodological refinements, including automated liquid handling of hundreds of DD PCR reaction setups combined with capillary electrophoresis, a prototype computer program to automatically allow positive band identification from a fluorescence differential display image, and restriction fragment-based DD screenings that can link any cDNA fragment directly to a given gene once the sequence information of all transcripts becomes available. Other improvements discussed are combining DD and DNA microarrays by reducing the complexity of cDNA probes while increasing the sensitivity of detection, and a DD approach to detect prokaryotic mRNA expression. The authors also demonstrate the power of DD technology with a collection of outstanding examples of DD applications and detailed experimental procedures. The elegant studies described here have led to the discovery of many important genes involved in viral infection, Prion disease, cancer, ovulation, circadian clock, floral color, transcription repression gene silencing, mRNA polymorphism, and protein-RNA interaction. State-of-the-art and highly practical, Differential Display Methods, Second Edition offers gene hunters the possibility of genome-wide comprehensive DD screening, as well as a proven road map for any successful "gene fishing" expedition
Member of
Cataloging source
GW5XE
Dewey number
572.8
Illustrations
illustrations
Index
index present
Language note
English
LC call number
QP623.5.M47
LC item number
D54 2005
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
NLM call number
  • QU 25
  • W1
NLM item number
  • D569 2006
  • ME9616J v.317 2006
http://library.link/vocab/relatedWorkOrContributorDate
1921-
http://library.link/vocab/relatedWorkOrContributorName
  • Liang, Peng
  • Meade, Jonathan D
  • Pardee, Arthur B.
Series statement
Methods in molecular biology
Series volume
v. 317
http://library.link/vocab/subjectName
  • Messenger RNA
  • Gene expression
  • Polymerase chain reaction
  • DNA fingerprinting
  • Gene Expression Profiling
  • Gene Expression
  • Molecular Biology
  • Oligonucleotide Array Sequence Analysis
  • SCIENCE
  • DNA fingerprinting
  • Gene expression
  • Messenger RNA
  • Polymerase chain reaction
Label
Differential display methods and protocols, edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee
Instantiates
Publication
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Methodologies -- Global analysis of gene expression by differential display: a mathematical model / Shitao Yang and Peng Liang -- Automation of fluorescent differential display with digital readout / Jonathan D. Meade [and others] -- Ordered differential display (ODD) / Mikhail V. Matz and Ella A. Meleshkevitch -- GeneCalling(tm): transcript profiling coupled to a gene database query / Richard A. Shimkets -- High density sampling differential display of prokaryotic mRNAs with RAP-PCR / Dana M. Walters and Pierre E. Rouviere -- Vertical arrays: microarrays of complex mixtures of nucleic acids / Rosana Risques [and others] -- Automated pattern ranking in differential display data analysis / Tero Aittokallio [and others] -- Linking cDNA-AFLP-based gene expression patterns and ESTs / Ling Qin, Pjotr Prins, and Johannes Helder -- Applications -- Differentially expressed genes associated with hepatitis B virus HBx and MHBs protein function in hepatocellular carcinoma / Dae-Ghon Kim -- Identification of disease markers by differential display: prion disease / Michael Clinton [and others] -- Saturation screening for p53 target genes by digital fluorescent differential display / Yong-Jig Cho [and others] -- Identification of p53-regulated genes by the method of differential display / Yunping Lin, Roger P. Leng, and Samuel Benchimol
  • Identification by differential display of IL-24 autocrine loop activated by ras oncogenes / Zhongjia Tan, Mai Wang, and Peng Liang -- Comprehensive analysis of ovarian gene expression during ovulation using differential display / Lawrence Espey -- Functional analysis of nocturnin: a circadian clock regulated gene identified by differential display / Julie E. Baggs and Carla B. Green -- Isolation and characterization of anthocyanin 5-0-glucosyltransferase in perilla frutescens var. Crispa by differential display / Mami Yamasaki and Kazuki Saito -- Identification of target genes of a yeast transcriptional repressor / Bernard Mai and Linda L. Breeden -- Detection of an mRNA polymorphism by differential display / Shan Liang [and others] -- Silencing in yeast: identification of CLR4 targets / Sergey V. Ivanov and Alla V. Ivanova -- Identification of mRNA bound to RNA binding proteins by differential display / Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian -- Differential display / Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian
Control code
262691915
Dimensions
unknown
Edition
2nd ed.
Extent
1 online resource (xiii, 319 pages)
Form of item
online
Isbn
9781280358739
Lccn
2005006298
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1385/1592599680.
Other physical details
illustrations.
http://library.link/vocab/ext/overdrive/overdriveId
978-1-58829-338-1
Specific material designation
remote
System control number
(OCoLC)262691915
Label
Differential display methods and protocols, edited by Peng Liang, Jonathan D. Meade, Arthur B. Pardee
Publication
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Methodologies -- Global analysis of gene expression by differential display: a mathematical model / Shitao Yang and Peng Liang -- Automation of fluorescent differential display with digital readout / Jonathan D. Meade [and others] -- Ordered differential display (ODD) / Mikhail V. Matz and Ella A. Meleshkevitch -- GeneCalling(tm): transcript profiling coupled to a gene database query / Richard A. Shimkets -- High density sampling differential display of prokaryotic mRNAs with RAP-PCR / Dana M. Walters and Pierre E. Rouviere -- Vertical arrays: microarrays of complex mixtures of nucleic acids / Rosana Risques [and others] -- Automated pattern ranking in differential display data analysis / Tero Aittokallio [and others] -- Linking cDNA-AFLP-based gene expression patterns and ESTs / Ling Qin, Pjotr Prins, and Johannes Helder -- Applications -- Differentially expressed genes associated with hepatitis B virus HBx and MHBs protein function in hepatocellular carcinoma / Dae-Ghon Kim -- Identification of disease markers by differential display: prion disease / Michael Clinton [and others] -- Saturation screening for p53 target genes by digital fluorescent differential display / Yong-Jig Cho [and others] -- Identification of p53-regulated genes by the method of differential display / Yunping Lin, Roger P. Leng, and Samuel Benchimol
  • Identification by differential display of IL-24 autocrine loop activated by ras oncogenes / Zhongjia Tan, Mai Wang, and Peng Liang -- Comprehensive analysis of ovarian gene expression during ovulation using differential display / Lawrence Espey -- Functional analysis of nocturnin: a circadian clock regulated gene identified by differential display / Julie E. Baggs and Carla B. Green -- Isolation and characterization of anthocyanin 5-0-glucosyltransferase in perilla frutescens var. Crispa by differential display / Mami Yamasaki and Kazuki Saito -- Identification of target genes of a yeast transcriptional repressor / Bernard Mai and Linda L. Breeden -- Detection of an mRNA polymorphism by differential display / Shan Liang [and others] -- Silencing in yeast: identification of CLR4 targets / Sergey V. Ivanov and Alla V. Ivanova -- Identification of mRNA bound to RNA binding proteins by differential display / Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian -- Differential display / Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian
Control code
262691915
Dimensions
unknown
Edition
2nd ed.
Extent
1 online resource (xiii, 319 pages)
Form of item
online
Isbn
9781280358739
Lccn
2005006298
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1385/1592599680.
Other physical details
illustrations.
http://library.link/vocab/ext/overdrive/overdriveId
978-1-58829-338-1
Specific material designation
remote
System control number
(OCoLC)262691915

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