Coverart for item
The Resource Molecular modeling of nucleic acids, Neocles B. Leontis, editor, John SantaLucia, Jr., editor

Molecular modeling of nucleic acids, Neocles B. Leontis, editor, John SantaLucia, Jr., editor

Label
Molecular modeling of nucleic acids
Title
Molecular modeling of nucleic acids
Statement of responsibility
Neocles B. Leontis, editor, John SantaLucia, Jr., editor
Contributor
Subject
Genre
Language
eng
Member of
Action
digitized
Cataloging source
MUU
Dewey number
572.8/33
Illustrations
illustrations
Index
index present
Language note
English
LC call number
QP620
LC item number
.M64 1998
Literary form
non fiction
NAL call number
QD1.A45
NAL item number
no.682
Nature of contents
  • dictionaries
  • bibliography
NLM call number
  • 1998 B-136
  • QU 58
NLM item number
M7175 1998
http://library.link/vocab/relatedWorkOrContributorDate
  • 1964-
  • 1997 :
http://library.link/vocab/relatedWorkOrContributorName
  • Leontis, Neocles B
  • SantaLucia, John
  • American Chemical Society
  • American Chemical Society
Series statement
ACS symposium series
Series volume
682
http://library.link/vocab/subjectName
  • Nucleic acids
  • Nucleic acids
  • Computing Methodologies
  • Nucleic Acids, Nucleotides, and Nucleosides
  • Models, Theoretical
  • Investigative Techniques
  • Information Science
  • Chemicals and Drugs
  • Analytical, Diagnostic and Therapeutic Techniques and Equipment
  • Nucleic Acids
  • Computer Simulation
  • Models, Molecular
  • SCIENCE
  • Nucleic acids
  • Human Anatomy & Physiology
  • Health & Biological Sciences
  • Animal Biochemistry
Label
Molecular modeling of nucleic acids, Neocles B. Leontis, editor, John SantaLucia, Jr., editor
Instantiates
Publication
Note
  • Title from PDF title page (ACS publications, viewed Aug 24, 2009)
  • "Developed from a symposium sponsored by the Division of Computers in Chemistry, at the 213th National Meeting of the American Chemical Society, San Francisco, CA, April 13-17, 1997."
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
The energetics of nucleotide ionization in water-counterion environments / Harshica Fernando, Nancy S. Kim, George A. Papadantonakis, and Pierre R. LeBreton -- Parameterization and simulation of the physical properties of phosphorothioate nucleic acids / Kenneth E. Lind, Luke D. Sherlin, Venkatraman Mohan, Richard H. Griffey, and David M. Ferguson -- Crystallographic studies of RNA internal loops / Stephen R. Holbrook -- Hydrogen-bonding patterns observed in the base pairs of duplex oligonucleotides / William N. Hunter, Gordon A. Leonard, and Tom Brown -- Structure and stability of DNA containing inverted anomeric centers and polarity reversals / James M. Aramini, Johan H. van de Sande, and Markus W. Germann -- Conformational analysis of nucleic acids : problems and solutions / Andrew N. Lane -- NMR structure determination of a 28-nucleotide signal recognition particle RNA with complete relaxation matrix methods using corrected nuclear Overhauser effect intensities / Peter Lukavsky, Todd M. Billeci, Thomas L. James, and Uli Schmitz -- Molecular modeling of DNA using Raman and NMR data, and the nuclease activity of 1,10-phenanthroline-copper ion / W.L. Peticolas, M. Ghomi, A. Spassky, E.M. Evertsz, and T.S. Rush, III -- Three-dimensional NOESY-NOESY hybrid-hybrid matrix refinement of a DNA three-way junction / Varatharasa Thiviyanthan, Nishantha Illangasekare, Elliott Gozansky, Frank Zhu, Neocles B. Leontis, Bruce A. Luxon, and David G. Gorenstein -- Determination of structural ensembles from NMR data : conformational sampling and probability assessment / Nikolai B. Ulyanov, Anwer Mujeeb, Alessandro Donati, Patrick Furrer, He Liu, Shauna Farr-Jones, David E. Konerding, Uli Schmitz, and Thomas L. James -- NMR studies of the binding of an SPXX-containing peptide from high-molecular-weight basic nuclear proteins to an A-T rich DNA hairpin / Ning Zhou and Hans J. Vogel -- Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays / Jonathan E. Forman, Ian D. Walton, David Stern, Richard P. Rava, and Mark O. Trulson -- RNA folding dynamics : computer simulations by a genetic algorithm / A.P. Gultyaev, F.H.D. van Batenburg, and C.W.A. Pleij -- An updated recursive algorithm for RNA secondary structure prediction with improved thermodynamic parameters / David H. Mathews, Troy C. Andre, James Kim, Douglas H. Turner, and Michael Zuker -- Modeling of DNA via molecular dynamics simulation : structure, bending, and conformational t[r]ansitions / D.L. Beveridge, M.A. Young, and D. Sprous -- Molecular dynamics simulations on nucleic acid systems using the Cornell et al. force field and particle mesh Ewald electrostatics / T.E. Cheatham, III, J.L. Miller, T.I. Spector, P. Cieplak, and P.A. Kollman -- Observations on the A versus B equilibrium in molecular dynamics simulations of duplex DNA and RNA / Alexander D. MacKerell, Jr. -- Modeling duplex DNA oligonucleotides with modified pyrimidine bases / John Miller, Michael Cooney, Karol Miaskiewicz, and Roman Osman -- How the TATA box selects its protein partner / Nina Pastor, Leonardo Pardo, and Harel Weinstein -- RNA tectonics and modular modeling of RNA / Eric Westhof, Benoît Masquida, and Luc Jaeger -- Hairpin ribozyme structure and dynamics / A.R. Banerjee, A. Berzal-Herranz, J. Bond, S. Butcher, J.A. Esteban, J.E. Heckman, B. Sargueil, N. Walter, and J.M. Burke -- Molecular modeling studies on the ribosome / Stephen C. Harvey, Margaret S. VanLoock, Thomas R. Rasterwood, and Robert K.-Z. Tan -- Modeling unusual nucleic acid structures / Thomas J. Macke and David A. Case -- Computer RNA three-dimensional modeling from low-resolution data and multiple-sequence information / François Major, Sébastien Lemieux, and Abdelmjid Ftouhi -- Comparative modeling of the three-dimensional structure of signal recognition particle RNA / Christian Zwieb, Krishne Gowda, Niels Larsen, and Florian Müller
Control code
433594213
Extent
1 online resource (x, 435 pages)
Form of item
online
Isbn
9780841216464
Lccn
97042151
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
illustrations.
Reproduction note
Electronic reproduction.
Specific material designation
remote
System control number
(OCoLC)433594213
System details
Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002.
Label
Molecular modeling of nucleic acids, Neocles B. Leontis, editor, John SantaLucia, Jr., editor
Publication
Note
  • Title from PDF title page (ACS publications, viewed Aug 24, 2009)
  • "Developed from a symposium sponsored by the Division of Computers in Chemistry, at the 213th National Meeting of the American Chemical Society, San Francisco, CA, April 13-17, 1997."
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
The energetics of nucleotide ionization in water-counterion environments / Harshica Fernando, Nancy S. Kim, George A. Papadantonakis, and Pierre R. LeBreton -- Parameterization and simulation of the physical properties of phosphorothioate nucleic acids / Kenneth E. Lind, Luke D. Sherlin, Venkatraman Mohan, Richard H. Griffey, and David M. Ferguson -- Crystallographic studies of RNA internal loops / Stephen R. Holbrook -- Hydrogen-bonding patterns observed in the base pairs of duplex oligonucleotides / William N. Hunter, Gordon A. Leonard, and Tom Brown -- Structure and stability of DNA containing inverted anomeric centers and polarity reversals / James M. Aramini, Johan H. van de Sande, and Markus W. Germann -- Conformational analysis of nucleic acids : problems and solutions / Andrew N. Lane -- NMR structure determination of a 28-nucleotide signal recognition particle RNA with complete relaxation matrix methods using corrected nuclear Overhauser effect intensities / Peter Lukavsky, Todd M. Billeci, Thomas L. James, and Uli Schmitz -- Molecular modeling of DNA using Raman and NMR data, and the nuclease activity of 1,10-phenanthroline-copper ion / W.L. Peticolas, M. Ghomi, A. Spassky, E.M. Evertsz, and T.S. Rush, III -- Three-dimensional NOESY-NOESY hybrid-hybrid matrix refinement of a DNA three-way junction / Varatharasa Thiviyanthan, Nishantha Illangasekare, Elliott Gozansky, Frank Zhu, Neocles B. Leontis, Bruce A. Luxon, and David G. Gorenstein -- Determination of structural ensembles from NMR data : conformational sampling and probability assessment / Nikolai B. Ulyanov, Anwer Mujeeb, Alessandro Donati, Patrick Furrer, He Liu, Shauna Farr-Jones, David E. Konerding, Uli Schmitz, and Thomas L. James -- NMR studies of the binding of an SPXX-containing peptide from high-molecular-weight basic nuclear proteins to an A-T rich DNA hairpin / Ning Zhou and Hans J. Vogel -- Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays / Jonathan E. Forman, Ian D. Walton, David Stern, Richard P. Rava, and Mark O. Trulson -- RNA folding dynamics : computer simulations by a genetic algorithm / A.P. Gultyaev, F.H.D. van Batenburg, and C.W.A. Pleij -- An updated recursive algorithm for RNA secondary structure prediction with improved thermodynamic parameters / David H. Mathews, Troy C. Andre, James Kim, Douglas H. Turner, and Michael Zuker -- Modeling of DNA via molecular dynamics simulation : structure, bending, and conformational t[r]ansitions / D.L. Beveridge, M.A. Young, and D. Sprous -- Molecular dynamics simulations on nucleic acid systems using the Cornell et al. force field and particle mesh Ewald electrostatics / T.E. Cheatham, III, J.L. Miller, T.I. Spector, P. Cieplak, and P.A. Kollman -- Observations on the A versus B equilibrium in molecular dynamics simulations of duplex DNA and RNA / Alexander D. MacKerell, Jr. -- Modeling duplex DNA oligonucleotides with modified pyrimidine bases / John Miller, Michael Cooney, Karol Miaskiewicz, and Roman Osman -- How the TATA box selects its protein partner / Nina Pastor, Leonardo Pardo, and Harel Weinstein -- RNA tectonics and modular modeling of RNA / Eric Westhof, Benoît Masquida, and Luc Jaeger -- Hairpin ribozyme structure and dynamics / A.R. Banerjee, A. Berzal-Herranz, J. Bond, S. Butcher, J.A. Esteban, J.E. Heckman, B. Sargueil, N. Walter, and J.M. Burke -- Molecular modeling studies on the ribosome / Stephen C. Harvey, Margaret S. VanLoock, Thomas R. Rasterwood, and Robert K.-Z. Tan -- Modeling unusual nucleic acid structures / Thomas J. Macke and David A. Case -- Computer RNA three-dimensional modeling from low-resolution data and multiple-sequence information / François Major, Sébastien Lemieux, and Abdelmjid Ftouhi -- Comparative modeling of the three-dimensional structure of signal recognition particle RNA / Christian Zwieb, Krishne Gowda, Niels Larsen, and Florian Müller
Control code
433594213
Extent
1 online resource (x, 435 pages)
Form of item
online
Isbn
9780841216464
Lccn
97042151
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
illustrations.
Reproduction note
Electronic reproduction.
Specific material designation
remote
System control number
(OCoLC)433594213
System details
Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002.

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