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The Resource Sequence data analysis guidebook, edited by Simon R. Swindell

Sequence data analysis guidebook, edited by Simon R. Swindell

Label
Sequence data analysis guidebook
Title
Sequence data analysis guidebook
Statement of responsibility
edited by Simon R. Swindell
Contributor
Subject
Language
eng
Summary
Computers have revolutionized the analysis of sequencing data. It is unlikely that any sequencing projects have been performed in the last few years without the aid of computers. Recently their role has taken a further major step forward. Computers have become smaller and more powerful and the software has become simpler to use as it has grown in sophistication. This book reflects that change since the majority of packages described here are designed to be used on desktop computers. Computer software is now available that can run gels, collect data, and assess its accuracy. It can assemble, align, or compare multiple fragments, perform restriction analyses, identify coding regions and specific motifs, and even design the primers needed to extend the sequencing. Much of this soft{u00AD} ware may now be used on relatively inexpensive computers. It is now possible to progress from isolate d DNA to database submission without writing a single base down. To reflect this progression, the chapters in our Sequence Data Analysis Guidebook are arranged, not by software package, but by fimction. The early chapters deal with examining the data produced by modem automated sequenc{u00AD} ers, assessing its quality, and removing extraneous data. The following chap{u00AD} ters describe the process of aligning multiple sequences in order to assemble overlapping fragments into sequence contigs to compare similar sequences from different sources. Subsequent chapters describe procedures for compar{u00AD} ing the newly derived sequence to the massive amounts of information in the sequence databases
Member of
Is part of
Action
digitized
Cataloging source
YUS
Dewey number
574.87/328/0285
Illustrations
illustrations
Index
index present
Language note
English
LC call number
QP624
LC item number
.S47 1997
Literary form
non fiction
NAL call number
QH506.M45
NAL item number
v.70
Nature of contents
  • dictionaries
  • bibliography
NLM call number
  • W1 ME9616J v.70 1997
  • QH 441 S479 1997
http://library.link/vocab/relatedWorkOrContributorName
Swindell, Simon R
Series statement
Methods in molecular biology
Series volume
v. 70
http://library.link/vocab/subjectName
  • Nucleotide sequence
  • Sequence Analysis
  • Software
  • Nucleotide sequence
  • Nucleïnezuren
  • Sequenties
  • Nucleotiden
  • Wetenschappelijke technieken
Label
Sequence data analysis guidebook, edited by Simon R. Swindell
Instantiates
Publication
Note
Source of title; title from title screen
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
GeneJockeyII : entering and editing sequences / Phil Taylor -- The genetic data environment : a user modifiable and expandable multiple sequence analysis package / Jonathan A. Eisen -- ABI analysis : manipulation of sequence data from the ABI DNA sequencer / Tracy L. Hagemann, Sau-Ping Kwan -- SeqEd : manipulation of sequence data and chromatograms from the ABI DNA sequencer analysis files / Tracy L. Hagemann, Sau-Ping Kwan -- From ABI sequence data to LASERGENE's EDITSEQ / Catherine Arnold, Jonathan P. Clewley -- SEQMAN : contig assembly / Simon R. Swindell, Thomas N. Plasterer -- GeneJockeyII : DNA sequencing and fragment assembly / Phil Taylor -- Autoassembler sequence assembly software / Steven R. Parker -- MEGALIGN : the multiple alignment module of LASERGENE / Jonathan P. Clewley, Catherine Arnold -- GeneJockeyII : pair-wise sequence comparison / Phil Taylor -- GeneJockeyII : multiple alignment of homologous sequences / Phil Taylor -- Sequence navigator : multiple sequence alignment software / Steven R. Parker -- The European Bioinformatics Institute : network services / Tomas P. Flores, Robert A. Harper -- GeneAssist : Smith-Waterman and other database similarity searches and identification of motifs / Eugene G. Shpaer -- GENEMAN of LASERGENE / Jonathan P. Clewley -- GeneJockeyII : database searching / Phil Taylor -- GeneJockeyII : restriction analysis / Phil Taylor -- GeneJockeyII : translation and open reading frame analysis / Phil Taylor -- PROTEAN : protein sequence analysis and prediction / Thomas N. Plasterer -- MAPDRAW : restriction mapping and analysis / Thomas N. Plasterer -- The gene construction kit : DNA sequence analysis and presentation / Bruce R. Troen -- GeneJockeyII : primer design / Phil Taylor -- OLIGO : primer selection / Juan Jose Estruch -- PRIME : primer selection / Juan Jose Estruch -- PRIMERSELECT : primer and probe design / Thomas N. Plasterer -- The European Bioinformatics Institute : submission and updating of sequence databases / Tomas P. Flores, Benny Shomer
Control code
55684329
Dimensions
unknown
Extent
1 online resource (ix, 324 pages)
File format
unknown
Form of item
online
Isbn
9780896033580
Lccn
96044660
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1385/0896033589.
Other physical details
illustrations.
Quality assurance targets
unknown
Reformatting quality
unknown
Reproduction note
Electronic reproduction.
Sound
unknown sound
Specific material designation
remote
System control number
(OCoLC)55684329
System details
Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002.
Label
Sequence data analysis guidebook, edited by Simon R. Swindell
Publication
Note
Source of title; title from title screen
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
GeneJockeyII : entering and editing sequences / Phil Taylor -- The genetic data environment : a user modifiable and expandable multiple sequence analysis package / Jonathan A. Eisen -- ABI analysis : manipulation of sequence data from the ABI DNA sequencer / Tracy L. Hagemann, Sau-Ping Kwan -- SeqEd : manipulation of sequence data and chromatograms from the ABI DNA sequencer analysis files / Tracy L. Hagemann, Sau-Ping Kwan -- From ABI sequence data to LASERGENE's EDITSEQ / Catherine Arnold, Jonathan P. Clewley -- SEQMAN : contig assembly / Simon R. Swindell, Thomas N. Plasterer -- GeneJockeyII : DNA sequencing and fragment assembly / Phil Taylor -- Autoassembler sequence assembly software / Steven R. Parker -- MEGALIGN : the multiple alignment module of LASERGENE / Jonathan P. Clewley, Catherine Arnold -- GeneJockeyII : pair-wise sequence comparison / Phil Taylor -- GeneJockeyII : multiple alignment of homologous sequences / Phil Taylor -- Sequence navigator : multiple sequence alignment software / Steven R. Parker -- The European Bioinformatics Institute : network services / Tomas P. Flores, Robert A. Harper -- GeneAssist : Smith-Waterman and other database similarity searches and identification of motifs / Eugene G. Shpaer -- GENEMAN of LASERGENE / Jonathan P. Clewley -- GeneJockeyII : database searching / Phil Taylor -- GeneJockeyII : restriction analysis / Phil Taylor -- GeneJockeyII : translation and open reading frame analysis / Phil Taylor -- PROTEAN : protein sequence analysis and prediction / Thomas N. Plasterer -- MAPDRAW : restriction mapping and analysis / Thomas N. Plasterer -- The gene construction kit : DNA sequence analysis and presentation / Bruce R. Troen -- GeneJockeyII : primer design / Phil Taylor -- OLIGO : primer selection / Juan Jose Estruch -- PRIME : primer selection / Juan Jose Estruch -- PRIMERSELECT : primer and probe design / Thomas N. Plasterer -- The European Bioinformatics Institute : submission and updating of sequence databases / Tomas P. Flores, Benny Shomer
Control code
55684329
Dimensions
unknown
Extent
1 online resource (ix, 324 pages)
File format
unknown
Form of item
online
Isbn
9780896033580
Lccn
96044660
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1385/0896033589.
Other physical details
illustrations.
Quality assurance targets
unknown
Reformatting quality
unknown
Reproduction note
Electronic reproduction.
Sound
unknown sound
Specific material designation
remote
System control number
(OCoLC)55684329
System details
Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002.

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