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The Resource Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers, Eleazar Eskin [and others] (eds.)

Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers, Eleazar Eskin [and others] (eds.)

Contributor
Summary
This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2005 satellite events - the First Annual Workshop on Systems Biology, RSB 2005, and the Second Annual Workshop on Regulatory Genomics, RRG 2005, held in San Diego, CA, USA in December 2005. The 21 revised full papers presented were carefully reviewed and selected for inclusion in the book. The papers address a broad variety of topics in systems biology and regulatory genomics including inference of gene regulatory and protein signaling networks, model prediction of drug mechanism, pathway mapping and evolution in protein interaction networks, multi-scale methods which bridge abstract and detailed models, systematic design of genome-scale experiments, modeling and recognition of regulatory elements, identification and modeling of cis-regulatory regions, modeling the structure and function of the regulatory region, and comparative genomics of regulation
Language
eng
Work
Publication
Extent
1 online resource (x, 257 pages)
Contents
  • An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome
  • The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways
  • Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations
  • Comparison of Protein-Protein Interaction Confidence Assignment Schemes
  • Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs
  • Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes
  • Improvement of Computing Times in Boolean Networks Using Chi-square Tests
  • Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements
  • Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
  • Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
  • Improved Duplication Models for Proteome Network Evolution
  • Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis
  • Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data
  • Topological Robustness of the Protein-Protein Interaction Networks
  • A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data
  • Probabilistic in Silico Prediction of Protein-Peptide Interactions
  • Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
  • Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties
  • An Interaction-Dependent Model for Transcription Factor Binding
  • Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans, H. sapiens and A. thaliana
  • A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism
Isbn
9783540485407
Instance
Label
Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers
Title
Systems biology and regulatory genomics
Title remainder
Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers
Statement of responsibility
Eleazar Eskin [and others] (eds.)
Title variation
RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics
Contributor
Subject
Genre
Language
eng
Summary
This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2005 satellite events - the First Annual Workshop on Systems Biology, RSB 2005, and the Second Annual Workshop on Regulatory Genomics, RRG 2005, held in San Diego, CA, USA in December 2005. The 21 revised full papers presented were carefully reviewed and selected for inclusion in the book. The papers address a broad variety of topics in systems biology and regulatory genomics including inference of gene regulatory and protein signaling networks, model prediction of drug mechanism, pathway mapping and evolution in protein interaction networks, multi-scale methods which bridge abstract and detailed models, systematic design of genome-scale experiments, modeling and recognition of regulatory elements, identification and modeling of cis-regulatory regions, modeling the structure and function of the regulatory region, and comparative genomics of regulation
Member of
Cataloging source
GW5XE
Dewey number
572.8/65
Illustrations
illustrations
Index
index present
LC call number
QH324.2
LC item number
.S976 2007eb
Literary form
non fiction
NAL call number
QH324.2
NAL item number
.S97 2007
Nature of contents
  • dictionaries
  • bibliography
NLM call number
  • 2007 B-643
  • QU 26.5
NLM item number
S9945 2007
http://library.link/vocab/relatedWorkOrContributorDate
  • 2005
  • 2005
http://library.link/vocab/relatedWorkOrContributorName
  • Eskin, Eleazar
  • RECOMB Satellite Workshop on Systems Biology
  • RECOMB Satellite Workshop on Regulatory Genomics
Series statement
  • LNCS sublibrary. SL 8, Bioinformatics
  • Lecture notes in computer science,
  • Lecture notes in bioinformatics
Series volume
4023.
http://library.link/vocab/subjectName
  • Bioinformatics
  • Genetic regulation
  • Systems Biology
  • Gene Regulatory Networks
  • Genomics
  • Genomics
  • Bioinformatics
  • Genetic regulation
  • Systems Biology
  • Gene Regulatory Networks
  • Informatique
  • Bioinformatics
  • Genetic regulation
Label
Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers, Eleazar Eskin [and others] (eds.)
Instantiates
Publication
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome -- The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways -- Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations -- Comparison of Protein-Protein Interaction Confidence Assignment Schemes -- Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs -- Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes -- Improvement of Computing Times in Boolean Networks Using Chi-square Tests -- Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements -- Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes -- Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels -- Improved Duplication Models for Proteome Network Evolution -- Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis -- Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data -- Topological Robustness of the Protein-Protein Interaction Networks -- A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data -- Probabilistic in Silico Prediction of Protein-Peptide Interactions -- Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences -- Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties -- An Interaction-Dependent Model for Transcription Factor Binding -- Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans, H. sapiens and A. thaliana -- A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism
Control code
262694278
Dimensions
unknown
Extent
1 online resource (x, 257 pages)
Form of item
online
Isbn
9783540485407
Lccn
2006940071
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1007/978-3-540-48540-7
Other physical details
illustrations.
http://library.link/vocab/ext/overdrive/overdriveId
978-3-540-48293-2
Specific material designation
remote
System control number
(OCoLC)262694278
Label
Systems biology and regulatory genomics : Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005 : revised selected papers, Eleazar Eskin [and others] (eds.)
Publication
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome -- The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways -- Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations -- Comparison of Protein-Protein Interaction Confidence Assignment Schemes -- Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs -- Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes -- Improvement of Computing Times in Boolean Networks Using Chi-square Tests -- Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements -- Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes -- Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels -- Improved Duplication Models for Proteome Network Evolution -- Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis -- Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data -- Topological Robustness of the Protein-Protein Interaction Networks -- A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data -- Probabilistic in Silico Prediction of Protein-Peptide Interactions -- Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences -- Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties -- An Interaction-Dependent Model for Transcription Factor Binding -- Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans, H. sapiens and A. thaliana -- A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism
Control code
262694278
Dimensions
unknown
Extent
1 online resource (x, 257 pages)
Form of item
online
Isbn
9783540485407
Lccn
2006940071
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other control number
10.1007/978-3-540-48540-7
Other physical details
illustrations.
http://library.link/vocab/ext/overdrive/overdriveId
978-3-540-48293-2
Specific material designation
remote
System control number
(OCoLC)262694278

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