Coverart for item
The Resource The challenges of systems biology : community efforts to harness biological complexity, edited by Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano, (electronic resource)

The challenges of systems biology : community efforts to harness biological complexity, edited by Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano, (electronic resource)

Label
The challenges of systems biology : community efforts to harness biological complexity
Title
The challenges of systems biology
Title remainder
community efforts to harness biological complexity
Statement of responsibility
edited by Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano
Contributor
Subject
Genre
Language
eng
Member of
Additional physical form
Also issued in print.
Cataloging source
EMM
Illustrations
illustrations
Index
index present
Literary form
non fiction
Nature of contents
dictionaries
http://library.link/vocab/relatedWorkOrContributorName
  • Stolovitzky, Gustavo
  • Kahlem, Pascal
  • Califano, Andrea
  • European Network of Excellence (ENFIN)
  • Dialogue for Reverse Engineering Assessments and Methods (DREAM)
Series statement
Annals of the New York Academy of Sciences,
Series volume
v. 1158
http://library.link/vocab/subjectName
  • Gene Regulatory Networks
  • Systems Biology
  • Algorithms
  • Computational Biology
  • Models, Biological
  • Systems Theory
Label
The challenges of systems biology : community efforts to harness biological complexity, edited by Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano, (electronic resource)
Instantiates
Publication
Note
  • "March 2009."
  • "The volume is divided into two parts. Part I features two papers selected from the ENFIN-DREAM conference, followed by papers selected from the DREAM2 conference" which took place in Madrid at the Spanish National Cancer Research Centre (CNIO), April 28-29, 2008 and the DREAM2 meeting sponsored by the New York Academy of Sciences, December 3-4, 2007 -- pref
  • Title from resource title screen (viewed April 7, 2008)
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
mixed
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Ranking genes by their co-expression to subsets of pathway members / Priit Adler ... [et al.] -- Creating reference datasets for systems biology applications using text mining / Martin Krallinger, Ana María Rojas, Alfonso Valencia -- The condition-dependent transcriptional network in Escherichia coli / Karen Lemmens ... [et al.] -- Reverse-engineering transcriptional modules from gene expression data / Tom Michoel ... [et al.] -- Specification of spatial relationships in directed graphs of cell signaling networks / Azi Lipshtat, Susana R. Neves, Ravi Iyengar -- Uncovering metabolic objectives pursued by changes of enzyme levels / Sabrina Hoffmann, Hermann-Georg Holzhütter -- Modeling of gene regulatory network dynamics using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Global robustness and identifiability of random, scale-free, and small-world networks / Yunchen Gong, Zhaolei Zhang -- The five-gene-network data analysis with local causal discovery algorithm using causal Bayesian networks / Changwon Yoo, Erik M. Brilz -- Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Network inference by combining biologically motivated regulatory constraints with penalized regression / Fabio Parisi, Heinz Koeppl, Felix Naef -- A gene network simulator to assess reverse engineering algorithms / Barbara Di Camillo, Gianna Toffolo, Claudio Cobelli --
  • A network inference workflow applied to virulence-related processes in Salmonella typhimurium / Ronald C. Taylor ... [et al.] -- Lessons from the DREAM2 challenges: a community effort to assess biological network inference / Gustavo Stolovitzky, Robert J. Prill, Andrea Califano -- DREAM2 challenge: integrated multi-array supervised learning algorithm for BCL6 transcriptional targets prediction / W.H. Lee ... [et al.] -- A data integration framework for prediction of transcription factor targets: a BCL6 case study / Matti Nykter ... [et al.] -- Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge / Vinsensius B. Vega ... [et al.] -- A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge / Hon Nian Chua ... [et al.] -- Replaying the evolutionary tape: biomimetic reverse engineering of gene networks / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Inferring gene networks: dream or nightmare?: part 1: challenges 1 and 3 / Angela Baralla, Wieslawa I. Mentzen, Alberto de la Fuente -- NIRest: a tool for gene network and mode of action inference / Mario Lauria, Francesco Iorio, Diego di Bernardo -- Reverse engineering of gene networks with LASSO and nonlinear basis functions / Mika Gustafsson ... [et al.] -- Prediction of pairwise gene interaction using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Inferring gene networks: dream or nightmare?: part 2: challenges 4 and 5 / Alan Scheinine ... [et al.] -- Inference of regulatory gene interactions from expression data using three-way mutual information / John Watkinson ... [et al.]
Control code
317633944
Dimensions
unknown
Extent
1 electronic text (xii, 316 pages)
File format
unknown
Form of item
electronic
Governing access note
Restricted to subscribers
Isbn
9781573317511
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
digital, HTML, PDF, illustrations
Quality assurance targets
unknown
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
(OCoLC)317633944
System details
  • Adobe Acrobat required for PDF version
  • Mode of access: World Wide Web
Type of computer file
Text in HTML and PDF format.
Label
The challenges of systems biology : community efforts to harness biological complexity, edited by Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano, (electronic resource)
Publication
Note
  • "March 2009."
  • "The volume is divided into two parts. Part I features two papers selected from the ENFIN-DREAM conference, followed by papers selected from the DREAM2 conference" which took place in Madrid at the Spanish National Cancer Research Centre (CNIO), April 28-29, 2008 and the DREAM2 meeting sponsored by the New York Academy of Sciences, December 3-4, 2007 -- pref
  • Title from resource title screen (viewed April 7, 2008)
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
mixed
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Ranking genes by their co-expression to subsets of pathway members / Priit Adler ... [et al.] -- Creating reference datasets for systems biology applications using text mining / Martin Krallinger, Ana María Rojas, Alfonso Valencia -- The condition-dependent transcriptional network in Escherichia coli / Karen Lemmens ... [et al.] -- Reverse-engineering transcriptional modules from gene expression data / Tom Michoel ... [et al.] -- Specification of spatial relationships in directed graphs of cell signaling networks / Azi Lipshtat, Susana R. Neves, Ravi Iyengar -- Uncovering metabolic objectives pursued by changes of enzyme levels / Sabrina Hoffmann, Hermann-Georg Holzhütter -- Modeling of gene regulatory network dynamics using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Global robustness and identifiability of random, scale-free, and small-world networks / Yunchen Gong, Zhaolei Zhang -- The five-gene-network data analysis with local causal discovery algorithm using causal Bayesian networks / Changwon Yoo, Erik M. Brilz -- Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Network inference by combining biologically motivated regulatory constraints with penalized regression / Fabio Parisi, Heinz Koeppl, Felix Naef -- A gene network simulator to assess reverse engineering algorithms / Barbara Di Camillo, Gianna Toffolo, Claudio Cobelli --
  • A network inference workflow applied to virulence-related processes in Salmonella typhimurium / Ronald C. Taylor ... [et al.] -- Lessons from the DREAM2 challenges: a community effort to assess biological network inference / Gustavo Stolovitzky, Robert J. Prill, Andrea Califano -- DREAM2 challenge: integrated multi-array supervised learning algorithm for BCL6 transcriptional targets prediction / W.H. Lee ... [et al.] -- A data integration framework for prediction of transcription factor targets: a BCL6 case study / Matti Nykter ... [et al.] -- Inferring direct regulatory targets of a transcription factor in the DREAM2 challenge / Vinsensius B. Vega ... [et al.] -- A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge / Hon Nian Chua ... [et al.] -- Replaying the evolutionary tape: biomimetic reverse engineering of gene networks / Daniel Marbach, Claudio Mattiussi, Dario Floreano -- Inferring gene networks: dream or nightmare?: part 1: challenges 1 and 3 / Angela Baralla, Wieslawa I. Mentzen, Alberto de la Fuente -- NIRest: a tool for gene network and mode of action inference / Mario Lauria, Francesco Iorio, Diego di Bernardo -- Reverse engineering of gene networks with LASSO and nonlinear basis functions / Mika Gustafsson ... [et al.] -- Prediction of pairwise gene interaction using threshold logic / Tejaswi Gowda, Sarma Vrudhula, Seungchan Kim -- Inferring gene networks: dream or nightmare?: part 2: challenges 4 and 5 / Alan Scheinine ... [et al.] -- Inference of regulatory gene interactions from expression data using three-way mutual information / John Watkinson ... [et al.]
Control code
317633944
Dimensions
unknown
Extent
1 electronic text (xii, 316 pages)
File format
unknown
Form of item
electronic
Governing access note
Restricted to subscribers
Isbn
9781573317511
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
digital, HTML, PDF, illustrations
Quality assurance targets
unknown
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
(OCoLC)317633944
System details
  • Adobe Acrobat required for PDF version
  • Mode of access: World Wide Web
Type of computer file
Text in HTML and PDF format.

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